In this episode, Dr. Eric sits down with gut health expert Lindsey Parsons to explore the deeper root causes behind SIBO—especially post-infectious IBS. Lindsey shares her personal journey from food poisoning to chronic gut issues and autoimmune conditions, eventually leading her to specialize in helping others heal complex digestive disorders.
They dive into what really drives recurrent SIBO, explaining how an autoimmune response triggered by food poisoning can damage the migrating motor complex, leading to ongoing bacterial overgrowth. Lindsey breaks down the differences between hydrogen and methane SIBO, the role of fungal overgrowth (SIFO), and why many traditional approaches fail to provide lasting results. The conversation also covers testing options like the IBS Smart test, limitations of breath testing, and how to better assess the gut microbiome.
You’ll also learn about effective treatment strategies, including when to use antibiotics versus herbal antimicrobials, the emerging use of MSM, the controversy around berberine, and the critical role of prokinetics in long-term management. If you want a clearer, more balanced understanding of why SIBO keeps coming back and how to manage it effectively, you’ll get a lot out of this episode.
Click Here to listen to it on the Save My Thyroid podcast
Dr. Eric Osansky:
I am superexcited to chat with Lindsey Parsons. We are going to be talking about SIBO and post infectious IBS. Lindsey Parsons is a certified health coach working out of Tucson, AZ. She specializes in helping clients heal gut issues and reverse autoimmune diseases naturally. She also hosts a podcast, The Perfect Stool: Understanding and Healing the Gut Microbiome. Prior to starting her health coaching career, Lindsey cofounded and ran a nonprofit advocating for healthier food in the Montgomery County public schools in Maryland. Welcome, Lindsey.
LindseyParsons:
Thank you so much.
Dr. Eric:
Great to have you here. Really excited for this conversation. Let’s start out with your background. Why do you focus on infectious IBS? I know it has something to do with your personal health journey, so maybe you could elaborate and talk a little bit about this.
Lindsey:
Sure. My health journey started somewhere in my early 20s when I moved to Costa Rica. I had a bad food poisoning incident. There were a couple incidents. I got some kind of parasite one year, and then I was back after that and lived there for a year and a half. I got food poisoning from mayonnaise. It was entirely my fault. I left it out of the fridge for several days and then ate it, trying to keep it cold. I made tuna salad. Typical food poisoning event.
When these typical food poisoning events happen, 9/10 people will be fine and recover, and 1/10 people will get post infectious IBS, which is what I got. I didn’t know that for many years. What followed was slowly but surely, more and more bloating when I ate. More loose stool. Never a lot of diarrhea kind of thing, but when I had a bowel movement, it was loose. I started using those wipes, which clogged up the plumbing multiple times in many houses.
Fast forward. At some point, I saw a gastroenterologist, who didn’t have much to say about what was going on. Didn’t think that was terribly out of the ordinary. Around 2014, I’m in my mid-30s. I’m diagnosed with Hashimoto’s thyroiditis, pernicious anemia, inability to digest B12, and a platelet autoimmune disease called ITP. They subsequently removed that diagnosis and said they changed the criteria, so maybe I never had it.
My antibodies aren’t terribly high with Hashimoto’s, and they saw I had nodules on my thyroid. They then saw the damage from the Hashimoto’s and diagnosed me. I wasn’t far enough along to have to go on thyroid hormone.
I ended up seeing an endocrinologist. “We’re just going to wait and see what happens. Eventually, your thyroid will stop functioning, and we will supplement. Eventually, we will have to have it removed, and that will be that.” Are you crazy? I am going to wait for my body to destroy my thyroid? What kind of an idiot would do that?
I did some research. I knew there was gut stuff going on. At this point, I had heard about FMT. I did one on myself. Very unadvisedly without testing for pathogens or anything. Just thought, what the heck. I had suffered for many years and thought maybe I could fix all these things. My B12 level did shoot up temporarily, but it didn’t stay that way. I have always had to take sublingual B12, even though a B12 shot did normalize my antibodies for pernicious anemia.
Eventually, I was diagnosed by a functional medicine doctor with SIBO. I think that had been the first time I had heard about it. Maybe I read a book about it. I got a breath test that was marginally positive and went through herbal treatment; rifaximin, which is the typical antibiotic that they give for SIBO; and improved enough for a time. Then it just kept coming back.
That is the pattern with people who have post infectious IBS. The problem is not an overgrowth of bacteria. Yes, that’s the problem, but that’s not the root cause of the problem. That is an autoimmune attack on your migrating motor complex (MMC). I had recurrent SIBO and learned to manage it with antimicrobials.
I eventually became a health coach and learned more about this. I started specializing in gut health and learned a lot more about it. I understood a lot better. I probably had some candida along the way in there. Various other sundry things. I had endometriosis and infertility and some of these other things that happened where you have all sorts of problems in your gut and thyroid. That was my journey.
Dr. Eric:
Sounds like you have been through a lot between the post infectious IBS, the Hashimoto’s, pernicious anemia, some other health conditions. These days, you’re doing a lot better.
With Hashimoto’s, you said you haven’t been on thyroid hormone replacement at all?
Lindsey:
Never. Once I corrected what was going on in my gut, and I went off gluten and dairy, for a time, I went off soy. Then the Hashimoto’s never advanced. I wouldn’t say I have optimal thyroid function, but I’m still totally within optimal TSH at least.
Dr. Eric:
Remind me, you were diagnosed with Hashimoto’s prior to being diagnosed with post infectious IBS?
Lindsey:
I believe so. It was a year or two before. Post infectious IBS, I have never officially been diagnosed, but I took the IBS-Smart test, and it was positive for vinculin antibodies.
Dr. Eric:
Okay. We’ll talk more about that. Not all cases of SIBO are post infectious IBS, correct?
Lindsey:
Correct. Some people have other reasons for SIBO. Maybe they took some antibiotics, and the balance of bacteria just got off. Some people, it’s fungal. Some people, it’s actually SIFO. It’s candida in the gut. Some people have adhesions that might be slowing their motility. There are people with Ehler’s Danlos Syndrome that have motility issues. Sometimes, it’s stress related or thyroid related. There are kinds of dysbiosis that are not SIBO per se.
SIBO itself almost always presents with bloating or gas. Some people for whatever reason don’t bloat, but it’s pretty rare. Most people with SIBO are bloating. Every time they eat, they are roughly getting worse throughout the day.
Not all SIBO is post infectious IBS. Only the kind that keeps recurring. Then it’s worth testing and finding out if it’s post infectious IBS.
Right now, you can do the IBS-Smart Test, which does the vinculin and the CdtB antibodies, which are a distending toxin B that is on the cell wall of gram negative bacteria, particularly salmonella, E.coli, campylobacter.
In an episode of food poisoning, your body will mount a defense to that CdtB, which it should do. For some people, it also sees the vinculin, which is a protein involved in the MMC, which does these cleaning waves of our gut every 2-3 hours after we eat roughly. The cleaning waves won’t happen if your body mistakes this vinculin protein for the CdtB protein and starts attacking it.
Then you get a disrupted wave. It maybeback flows, or it doesn’t go smoothly. It allows for the bacteria to gather in the small intestine. Then you get these overgrowths typically of either klebsiella or E.coli, the loose stool presentation, which is IMO overgrowth, which is more of a dysbiosis that may or may not have been caused by the same reason but mostly not post infectious.
This is usually related to antibiotic use or dysbiosis that accumulates over time, where people end up with high levels of methanogens, which are not bacteria. They are archaea. It’s a dysbiosis that is probably not caused by post infectious IBS, but sometimes.
Sometimes, you can have both. You often do have both because hydrogen producers, which is the SIBO-D type presentation, those hydrogen producers feed methane producers. Sometimes, it starts with hydrogen overgrowth and feeds into methane. Those guys start overgrowing and taking over. Then people are really miserable because they are constipated and bloated. That doubles back on itself and makes them even more miserable.
Dr. Eric:
Backtracking. For those who might not be following, SIBO. You have the MMC, which is the cleansing wave. You want the cleansing wave to sweep out the bacteria from the small intestine. There could be numerous factors that negatively affect the MMC, but when you have post infectious IBS, you’re getting an autoimmune process that is affecting the MMC, which is as of now not reversible.
If someone does a health history, if they come in presenting with gas, bloating, or maybe they have already been diagnosed with SIBO, but they have undergone different treatments, whether it’s rifaximin or herbal antimicrobials or the Elemental Diet, and it keeps on coming back, maybe you suspect that it might be potentially post infectious IBS.
You might run a test such as the IBS-Smart that looks at these antibodies. If that IBS-Smart is positive, then that probably confirms that the person does have post infectious IBS. There is not a cure for this, but you can treat it. We will talk about prokinetics, which a person can take to maintain a state of wellness, where they are not experiencing the gas and bloating continuously.
Lindsey:
Yeah. I did leave one thing out, which was the other test that tests this. It’s by Vibrant. They do a Candida + IBS Profile. That includes those same antibodies for IBS, but then they also do some candida antibodies. Those are the two options in the U.S. I know that there is a place called Colab, where you can access the IBS-Smart from abroad if a doctor orders it for you.
Dr. Eric:
With the candida antibodies, as far as I understand, there is no specific test for SIFO. You can do certain tests for antibodies. You can look at organic acids tests, but there is nothing that really pinpoints the fungal overgrowth in the small intestine. Correct?
Lindsey:
The best marker for that would be arabinitol in an organic acids test. That would be the Genova Metabolomix, or NutrEval has that marker.
Some other tests have arabinose, which is a less specific marker. It often points to candida. If it’s in the small intestine, and if it’s invasive and forming high fat and sending metabolites to the urine.
You might see candida on a stool test, but I almost never see them both on a stool test and an organic acids test. They often seem opposing. If I see it in a stool test, it’s more likely in the large intestine.
Dr. Eric:
I’m sure a lot of people know that IBS-D, methane, hydrogen. If it’s hydrogen dominant, they are more likely to have loose stools, diarrhea, IBS-D (diarrhea). If it’s more methane dominant, they are more likely to have constipation and less likely to have post infectious IBS.
Lindsey:
Yeah. Maybe 10-20% of those people might. Of all the people who have IBS, probably 70-80% actually have SIBO.
Dr. Eric:
Not all cases of IBS are caused by SIBO, but 70-80%. Most conventional doctors still don’t understand that.
Lindsey:
No.
Dr. Eric:
If you have those symptoms, most of themwon’t even test for SIBO.
Lindsey:
I asked a doctor, too. I was trying to get some rifaximin because I wanted a good cleanout. I went to see a gastroenterologist, and he gave me a SIBO test. They sent incorrect instructions on the substrate. They only had me take a small quantity.
What I ended up doing was taking fructose because glucose was an inferior substrate. Ideally, you have lactulose; that’s the best one. For me, the second best choice is fructose, but that’s not officially used. I think I used too small of an amount. No, maybe I did take their glucose. The test came back negative, but I managed my SIBO, and it was going to come back negative anyway. I couldn’t get the prescription.
Dr. Eric:
Most labs use lactulose. I know there used to be a company, BioHealth, that is not in business anymore, but they offered the glucose and lactulose. There are other companies that currently do that, which offer lactulose and glucose. You have to request it.
Lindsey:
Whomever orders the test chooses which substrate to use. Have you heard of FoodMarble?
Dr. Eric:
I think so.
Lindsey:
It’s a handheld device that you can own to test-
Dr. Eric:
Yeah. I heard you during one of your solo podcast episodes in preparation for this, and you mentioned it. Dr. William Davis, I don’t know if it’s the same device, but in his book SuperGut. I know he has Wheat Belly, not that book. But his most recent book, he was talking about another device to measure in place of the breath test. Is that the FoodMarble? Is that a different device?
Lindsey:
Probably. I don’t know of any other devices you can buy. I like the device for IMO because they tend to have more trouble eradicating it, even in one round of antimicrobials, so it’s good for testing and retesting. It maybe costs $250 compared to getting a commercial test for $200. This way, you can test and retest.
Dr. Eric:
Do you think it’s just as good as a SIBO breath test?
Lindsey:
It’s not calibrated every time you use it. But I think it’s good enough. You’ll see the signal if it’s there, let’s put it that way.
Dr. Eric:
Interesting. Maybe it was the FoodMarble. It rings a bell. Maybe it was just because I heard you say it during the interview, but he mentioned a similar device. Maybe it is the same device in the book. Then I forgot where, but others mentioned where they didn’t feel like it was accurate. I don’t think it was practitioners who really focused on SIBO like you do since that’s really your specialty. That’s interesting. I might have to look into that. The SIBO breath test also is not perfect.
Lindsey:
No. In fact, I rarely use SIBO breath testing. If I hear someone who has extreme bloating after they eat, and then I look at their gut, and I can see what’s in there, do they have an overgrowth of E. coli or klebsiella? Do they have a lot of gram-negative bacteria?
Usually, you can tell what’s going on based on the gut microbiome. If they’re constipated, do they have excess methanogens? Do they have methanogens present? Between symptoms and the stool test, I feel like that’s a better view. If there is a parasite or if you are getting organic acids, if you happen to see candida on the stool test, there are more opportunities to see more of what’s going on. Occasionally, you do get a random parasite that people have.
The gut test I use the most right now is either the Tiny Health PRO or the Gut Zoomer from Vibrant. On the Vibrant test, which I use the most, you are seeing bile acids, short chain fatty acids, gluten antibodies, active antibodies, five or six inflammation markers. You’re seeing a lot. You can see if there is potentially IBD and the whole microbiome, what’s overgrown, what’s not. It gives a good view of what’s going on in the gut.
Dr. Eric:
What is the first one you said? Tiny Health PRO?
Lindsey:
That was originally developed for mothers and babies to see how their microbiomes are doing. They do an adult version. The PRO adds on the gut health markers, so you have pancreatic elastase, secretory IgA, short chain fatty acids, beta glucuronidase, calprotectin, lactoferrin. All thosemeasures plus a genomic sequencing of the microbiome. There, you really know what is the dominant microorganism in this ecosystem? What is the second most dominant? Third most dominant? What’s really overgrown? What’s pathogenic? It’s probably the best in terms of actually knowing what’s going on in the microbiome.
Dr. Eric:
Not familiar with that test. Might have to look into that.
Klebsiella, for example. If it shows up on the Gut Zoomer or GI Map or GI Effects, even though that’s a large intestine test, it might still correlate with the small intestine, is what you’re saying.
Lindsey:
Let’s put it this way. If someone has an overgrowth of klebsiella, and they have SIBO and histamine reactions, it’s all pretty good correlations. That’s what you’re dealing with. Klebsiella is a histamine producing bacteria. It might not be overgrown, but if it’s present, and they have all these other things, we know what’s in there.
Not everybody has klebsiella; only a relatively small portion of people do. Everyone has some E. coli. That one is tougher. Sometimes, you see a pathogenic E. coli. Then you know this is probably an E. coli presentation. If there is no histamine reaction, and it’s SIBO, it’s probably E. coli that’s overgrown. The research of Mark Pimentel shows us those are the two primary organisms overgrown in SIBO. Everything is overgrowing; it’s these ones that are taking over.
Dr. Eric:
Getting back to food poisoning. There might be some people listening who have a lot of gas and bloating, but they don’t remember having any food poisoning. That doesn’t necessarily rule out post infectious IBS. Maybe they had food poisoning, but they didn’t remember. Sometimes, it’s obvious. Sometimes, it’s not so obvious.
Lindsey:
Sometimes, people don’t remember. Maybe you thought it was viral. Maybe it was viral, and that’s where it came from. Sometimes, people had diarrhea to begin with, and then it got worse for a week or a few days. The distinction wasn’t super clear.
If you have recurrent SIBO, I think it’s worth doing the IBS-Smart to find out if you have the antibodies. You will manage it differently. You will know up front this will not go away with a good round of antibiotics or antimicrobials. This will keep coming back. How do you manage this?
Dr. Eric:
With gas and bloating as common symptoms, do you find that most people experience just when eating certain foods, like high FODMAP foods? Does it vary? For some people, it doesn’t make a difference what they’re eating.
Lindsey:
The research has shown that if you avoid wheat and dairy, because wheat is a FODMAP, you will probably eliminate most of the FODMAPs because that’s where the bulk of the FODMAPsin our diet are. I notice if I eat too much avocado or asparagus, I will get bloated. If I eat dairy, it’s like death. I’m miserable. I’m also lactose intolerant. Of course, I’m taking a lactase enzyme when I’m eating dairy. Dairy is the absolute worst one.
Something with low wheat, I can eat a slice of sourdough bread, and that won’t bother me. I am not doing that because I am glutensensitive.
Yes, you can eat low FODMAPs, but I wouldn’t recommend it. It is a limited diet. You will miss out on a lot of fibers you need. Ultimately, you won’t end up with the microbiome you want to stop that recurrence of E.coli. I have taken anew approach most recently to dealing with recurrent SIBO or IMO, which is about using targeted fibers to try and remake the microbiome, so E.coli can’t regrow in heavy numbers. You will have the protective effects of all these good butyrate producing bacteria and trying to have the ones be most dominant in your colon.
Dr. Eric:
Cautious of doing low FODMAP, especially long term. I agree that can have negative effects on the gut microbiome. Unlike the Elemental Diet, which is an actual treatment, the low FODMAP diet is trying to manage symptoms and not doing anything to eradicate.
Lindsey:
It won’t get rid of it, no. You’ll feel better on it, but you can’t eat garlic and onions. Good luck going to a restaurant. I’ll have the plain lettuce salad with steak on top. That’s it. I’ll take olive oil and vinegar. That’s it. That’s all you can order at a restaurant if you can’t eat garlic. To me, it’s not a way to live.
Dr. Eric:
I agree. In some cases, maybe temporary while you’re treating it, if someone’s symptoms are severe.
Lindsey:
If they’re miserable. But the problem is people go on low FODMAPs. They’re reacting to this and that. The whole time, they’re thinking it’s the food. It’s not the food; it’s the bacteria. It’s not about the food.
Dr. Eric:
Are signs like weight loss more common compared to weight gain?
Lindsey:
I don’t often see weight loss with SIBO. Sometimes, you get reflux because you get that upward pressure from the bloating and such. Some people will have signs of reflux or silent reflux. That was one of my signs before I quit dairy. Having a perpetual cough after I ate. A little bit hoarse throat, which I still have. Gas, bloating, loose stool, those are very common SIBO symptoms. Sometimes, people have pain.
We haven’t talked about hydrogen sulfide SIBO, which is a different beast. That can happen if your sulfate reducing bacteria get overgrown. That one is particularly miserable. Usually, that’s the one where you’re having 6-10 urgent diarrhea episodes a day.
Dr. Eric:
Is that the Trio-Smart that looks at hydrogen sulfide?
Lindsey:
It does. I have sent people for Trio-Smarts, and 3-4 of the samples are invalid. It doesn’t work that well. It sometimes fails to diagnose when all the symptoms agree with it. People can’t tolerate garlic or onions or broccoli or Brussels sprouts or high fat foods. All the signs. They’re having urgent diarrhea. They get a negative test. No. They have this. You can tell.
Dr. Eric:
Like you said, you rarely do breath testing. You do a comprehensive stool panel by Vibrant Wellness, the Gut Zoomer. Did you say with most people, you give them the FoodMarble device?
Lindsey:
No, mostly people who if they know they have intestinal methanogen overgrowth, and I know they will keep retesting to see where they are, to see where the symptoms are.
It also depends. Have they already had a test or not? Do they need to test for the first time, and they will need at least one test and retest, so it economically makes more sense. It depends on the client.
There is also cost questions. Is there a suspicion of SIFO? If there is, maybe I need to do both a stool test and organic acids test. Is there suspicion of mycotoxins? If so, then there are deals with multiple tests with Vibrant, so it all depends on the person.
Dr. Eric:
To reinforce what you said earlier, if you are suspecting SIFO, you prefer Genova Organics because it looks at arabinitol, compared to Mosaic, which looks at arabinose.
Lindsey:
I do prefer that. I don’t necessarily already order that because of the practicalities of cost. If there is a deal where they can get three tests for $800, I will send them to that instead of having them spend $1,200 on three tests.
Dr. Eric:
Treatment. Before we get to the prokinetics with post infectious IBS, do you prefer the rifaximin, Xifaxan, herbal antimicrobials? There is the Elemental Diet. I think those are the only three options, right?
Lindsey:
Yeah. If people can get ahold of rifaximin, I don’t object to it. The research shows that it attacks in particular these overgrown organisms and does not disrupt the microbiome. That is what the research says. People’s experience might not be the same. In general, that’s what the research is showing.
Assuming they can’t get hold of it, or they don’t have a doctor who will diagnose it, then I usually recommend herbal things.
One thing I do not ever use is berberine. There was a big study that showed it decreases bifidum, a bunch of good butyrate producers. That’s something I won’t touch unless it’s absolute last resort.
I’m either using high dose allicin, or I like a protocol with MSM.
Dr. Eric:
I was going to ask you about MSM. I had a patient who couldn’t tolerate the antimicrobials, not berberine, which I’m sure you’re familiar with, the study that showed the biotics research and the Metagenics products. She couldn’t tolerate the herbal antimicrobials. The Elemental Diet didn’t work. She was trying a protocol with the MSM. I wasn’t as familiar with it. I have learned a lot from Dr. Allison Siebecker and Dr. NiralaJacobi, and I don’t remember them bringing that up. Can you talk about it?
Lindsey:
I wish I could attribute the person who talked about the protocol. I believe it was on Nirala Jacobi’s podcast.
The protocol begins with 1/8 teaspoon of MSM, which is a bitter powder. It’s a sulfur source. Cheap as dirt. You just double every day until you get to 32g. Hold there until the bloating is gone.
The doctor who recommended this protocol said that it was very effective. She didn’t care what kind of SIBO it was. She wasn’t even testing. She would give it to anybody, even if she thought it was hydrogen sulfide. I tend to stay away from sulfur when dealing with hydrogen sulfide, but she recommended that protocol.
I thought I wasn’t going to recommend it based on somebody saying something on a podcast, but I tried it on myself. I got up to 16g a day, half a tablespoon three times a day. My bloating was completely gone. I felt as good as I’d felt in forever.
I decided to keep the MSM around and use a little bit to kill a little bit of bacteria. Is this going to kill my beneficial microbes? Over the course of time, while I was using that, I used that and then used it as a maintenance, half a teaspoon a day or more if I started to feel more bloaty.
I discovered on my stool test that my beneficial microbes were not depleted. I was in good shape. I have since recommended some clients do it, and same thing. Came back in concert with a gut shake that has good fibers to promote butyrate producers. All the good bacteria had increased. None of the beneficial ones were depleted.
I think part of the reason is it’s a powder that dissolves really quickly in water. It’s definitely hitting the small intestine, not making it to the colon, I don’t think.
Dr. Eric:
Hmm. You mentioned berberine. Some controversy with berberine. I had Dr. Jason Hawrelak on the podcast. We had a little bit of a debate because he is the one I learned that about berberine. He was my instructor when I went through my master’s in nutrition back in 2013. Around 2018, I took a gut microbiome course through him. I forgot when I first heard about berberine.
There are so many positive studies recently looking at berberine and talking about the benefits of the gut microbiome. It’s conflicting. I know the study he mentioned, and you mentioned an older study. There are newer studies. If you type in “berberine for the gut microbiome,” most of what you see on PubMed is positive.
Dr. Allison Siebecker and Nirala Jacobi, too, use berberine. They also use oregano. Oregano for sure can affect some of the good bugs. Either way, when it comes to SIBO, some look at it as risk versus benefits. Even if it affects some of the good microbes, if it’s doing what it needs to do for SIBO, you could replenish the gut microbiome. There are a lot of different perspectives on berberine on the gut microbiome.
Lindsey:
I’m not deep in the research, so I rely on people like Jason Hawrelak and Brad Leech, who is his colleague, to filter that stuff. I did take that study and ran it through AI and asked it to summarize for me. Which go up, and which go down? Not only did it say that it pushed down the beneficial microbes, but it pushed up a variety of pathogenic microbes. In that study, it was not even helping with the stuff you’re trying to push down. I admit that I am not that familiar with the more recent research if there is something showing otherwise.
Either way, if I have a tool that is not that, that won’t be potentially harmful, I will use that tool first. As I said, you sometimes get to the point where you run out of options. Go to something that has some berberine in it, but not the only thing it has.
Also, with mycotoxins, I’m using that because there is not a lot of great herbal options. If people can’t get prescriptions, you have to find something to help them.
Dr. Eric:
The ones I mentioned have some berberine. Dr. Siebecker, when she worked with patients, I know she worked with really tough cases. She mentioned she would use really high doses of berberine in some cases. She was saying a lot of people can’t tolerate the high doses, but sometimes she would recommend 2,000-3,000mg, which is pretty high. Some people can’t tolerate 500-1,000mg.
How about Neem? Do you use that at all?
Lindsey:
I have used it in the past. I am trying to stay away from the more powerful stuff at this point. I would say the primary things I’m using now are the allicin. Sometimes, you’re getting SIFO presentation, too, so it might be that you’re using something for both the SIFO and the SIBO or IMO. Maybe you’re using the allicin to hit both of those. Then you’re adding the caprylic acid. Biofilm disrupts the GI phase 2. I always forget how to combine the words; it’s like GI phase 2 advanced something.
Dr. Eric:
Dr. Paul Anderson?
Lindsey:
Yeah. There is the SFI Health, Ther-Biotic Interfase. Some of those products.
Dr. Eric:
You use allicin not just for methane dominant SIBO, but even if it’s hydrogen dominant?
Lindsey:
I mostly use diet changes and some form of bismuth if possible for the hydrogen sulfide.
Dr. Eric:
With diet changes, do you recommend the Elemental Diet?
Lindsey:
That’s a last resort. That would probably only come into play for very resistant IMO. I’ve found that sometimes people can’t have enough antimicrobials. It’s not busting up the bloating. The constipation, you can usually get moving, but the bloating seems to be really resistant. That would be the one case where I have resorted to the Elemental Diet.
People don’t want to spend the money. They are not eating for three weeks, but three weeks of not eating, for some people, I had one guy who did it four times. It was totally his own choice to do it four times. He had a combo of gastritis and IMO, and that was the perfect thing for him because he couldn’t take a lot of stuff. He was so sensitive because of the gastritis. It was the perfect thing. He kept doing it over and over again, and he was completely clear of all symptoms of everything.
Dr. Eric:
Hmm. I know Dr. Siebecker, in the past, has said that could be more effective than the herbs.
Lindsey:
No doubt. Not a lot of people are buying it.
Dr. Eric:
I agree.
Lindsey:
No, thank you.
Dr. Eric:
Most people don’t want to do it, both costwise, and I find they don’t want to follow a liquid diet for 2-3 weeks.
Lindsey:
Exactly.
Dr. Eric:
Let’s talk about prokinetics. What are they? When would someone consider taking them? What are the top prokinetics you recommend?
Lindsey:
Prokinetics are something that helps move the small intestine. One of the most recommended and well-known ones is also used for constipation at higher doses, which is prucalopride. The brand name is Motegrity in the U.S.
That’s the one I currently take actually. I take a quarter of 1mg. For people who tend toward the IBS-D, too much of that is definitely way too much. I started taking that about six months ago. I had tried all of the other prokinetics. Iberogast is probably my second favorite after that.
They help the MMC overnight. When I go to sleep, I am probably still digesting for many hours. At least this helps me start to clear some things out of my small intestine. Every night, I get a good reset. I had a wave of diarrhea and problems, and I wasn’t sure what was going on. I stopped the thing that was adding to my motility. Sure enough, within 3-4 days, my bloating came back pretty bad. It was a really good trial of seeing is this as effective as I think it is?
But iberogast would probably be my second favorite because it’s a little antimicrobial, and it’s bile promoting. You take 30-60 drops before bed. They also just came out with apill form, which I haven’t tried. I’m not sure whether the dosing would be 1 or 2. That would be the dosing equivalent.
Any form of ginger. You could just take normal ginger if you wanted to go super cheap, but you might get that burning feeling in your chest. If you are taking it before bed, you might need a lot of water because sometimes it gets stuck, and you have an hour of feeling kind of gross. There is a number of products that have some form of slightly altered ginger, so it’s not quite as burny.
There is GI motility complex. There is something that has tryptophan in them, and that’s particularly good if you are on the constipation side. MotilPro, that’s Pure Encapsulations. There are a few newer ones that are based on other products, like d-Limonene. I tried plain d-Limonene, which didn’t work for me. There is one called MMC Restore. I think that’s Gaia Pro’s product. There is a variety of them.
Honestly, if you have post infectious IBS, I would say try and get ahold of prucalopride. There is also low dose azithromycin by prescription. Some people use low dose naltrexone (LDN) as a prokinetic. I take that, too, more trying to suppress any autoimmunity.
Incidentally, I did retest my antibodies, and I did two things. I did LDN for about nine months to a year. Then I also did two rounds of the prolonged fasting mimicking diet and retested my antibodies. They were negative for vinculin. This is after 30 years of this.
That being said, the SIBO is still there. They might be negative, but I still get bloating. I still have to keep managing it. I’m not sure it’s really gone.
Dr. Eric:
The prucalopride helps the best in your situation.
Lindsey:
In my experience, yeah.
Dr. Eric:
The iberogast is #2 in your experience. The LDN, you’re taking but moreso for the autoimmune component. What dose are you taking of LDN?
Lindsey:
4.5mg.
Dr. Eric:
How long have you been on that for?
Lindsey:
Probably at least a year at this point. I think I just passed a year.
Dr. Eric:
Anything else that I should have asked you that I didn’t ask you? We definitely covered a lot when it comes to post infectious IBS and SIBO. We spoke about some of the signs, symptoms, treatment, testing, prokinetics. Anything really urgent I’m missing?
Lindsey:
Maybe a little bit more about fiber. Say you go on a whole regime of killing off bacteria. You go through your rifaximin. You really want to build back the microbiome.
I look at gut reports day in and day out. All I do is look at people’s gut reports. Every single person has the same problems. They have low butyrate, low short chain fatty acids in total, too much proteobacteria, and some amount of dysbiosis. Which particular pathogen decided to take over is different for each person. At the end of the day, the base problem for every single person is they have low butyrate producers.
I am really careful now that after I finish people with anything antimicrobial, I also recommend a gut shake that includes very high levels of fiber, 40g of fiber in a shake. We are talking about apple pectin, psyllium husk, flaxseeds, resistant starch for people who are on the IBS-D side, immulin for people on the constipation side, and rice bran. I am putting them on a fiber shake, all of these fibers. Often glutamine for their leaky gut and some zinc carnosine for the leaky gut.
I am trying to help them rebuild a microbiome that is going to keep them healthy. It’s a bloaty, gassy mess for the first month or so. After that, things settle in.
Dr. Eric:
I was going to ask that. In the early stages of treatment, they’re not tolerating that well.
Lindsey:
I have gone through it myself, so I know what it’s like. It’s a bloaty, gassy mess for about a month. Then you settle in, and your microbiome is getting back into good shape and good order. I have yet to do my own stool test retest after a heavy protocol. But I do my own shake once a day. That’s for rebuilding and trying to prevent relapse.
Dr. Eric:
That’s awesome. You’re continuously doing things to help build your gut microbiome, taking prokinetics to help with the MMC. The prolonged fasting helped with vinculin antibodies, but still having the SIBO symptoms, so it didn’t completely get everything in remission. It potentially has some benefits. Do you still plan on doing the prolonged fast once or twice a year?
Lindsey:
I still have one more. I am meant to do three before I do my next IBS-Smart retest. I have to go off of LDN first. I haven’t willed myself to take another one since I had those negative antibodies.
I also use SBI powder any time I see there is a gut pathogen. If I see a pathogenic E. coli or an unknown diarrhea of any sort, or if I see C. diff in there, SBI powder. The perfect stool supplement company, too. I sell two products, the SBI powder and Tributyrin Max, which is a tributyrin, a better absorbed form of butyrate. I use that a lot with people to help turn around too much proteobacteria, too much oxygen in the colon. Try and promote butyrate producers.
The other thing I use is pomegranate husk. That is also good at wiping out the bad bacteria and promoting the good bacteria selectively.
Dr. Eric:
I forget who said this, but someone mentioned pomegranate as well. You shared a lot of really good information. This is really helpful, even if they’re not dealing with post infectious IBS, but SIBO in general. A lot of these things could also be beneficial even if someone just has GI issues without SIBO. A lot of the things could be really important regardless.
Lindsey:
If someone has random GI issues, especially on the loose side, even on the constipated side, sometimes SBI powder alone is enough to resolve their issues.
Dr. Eric:
A lot of people are low on butyrate, like you mentioned. Fiber as well.
Lindsey:
Literally every single stool test I see. I don’t have to look at the test; I know what the answer is already.
Dr. Eric:
I like the GI Map. Genova looks at those markers. I don’t know if they do. I think they do. GI Map doesn’t look at-
Lindsey:
I stopped using it entirely. To me, it’s almost useless at this point. Without the short chain fatty acids. Not to mention I get the gluten sensitivity markers and bile acids.
Dr. Eric:
It does look at that. I assume most people have the low butyrate and need some support. There are so many different tests out there. We all have our favorites. They’re not perfect, but we all fall in love with our own tests.
I’m familiar with some of the Vibrant Wellness tests. I know they’re a good company. Genova is a good company. There are a number of good companies out there. There are companies I won’t name where I have tried them, and I don’t care for them. They’re all trying to help.
Lindsey:
Accuracy is one question. How much information you get is another question.
Dr. Eric:
This was wonderful. Lindsey, if you could tell people where to find you. Mention your podcast, your website, anything else that you would like to discuss.
Lindsey:
My website is HighDesertHealthCoaching.com. My business is called High Desert Health. My supplements are PerfectStool.com. My podcast is The Perfect Stool: Understanding Healing the Gut Microbiome.
Dr. Eric:
You also shared the link to a quiz. Thank you so much. This was great. We’ve had a few people talk about SIBO. This is really the first one where there is an emphasis on post infectious IBS. As a result, more discussion on the prokinetics. I’m almost certain the first one to talk about MSM when it comes to SIBO as well. You definitely gave some newer information that people can’t find on the other interviews. Thank you so much. Really appreciate this.
Lindsey:
Thank you for having me. It was a pleasure.
***
Dr. Eric:
That was an excellent conversation with Lindsey on post infectious IBS. Recently, I interviewed Dr. Izabella Wentz, who released her new book on IBS. This conversation wasdefinitely a lot different than my conversation with Dr. Izabella. Really more basic, getting into a lot of the basics.
Food poisoning and SIBO. Food poisoning can damage the MMC, which is the cleansing wave of the small intestine. It is one potential cause of SIBO. When I interviewed Dr. Izabella, we spoke about the relationship between IBS and autoimmunity, but we didn’t talk about this specifically. If she brought it up, I would have, but I knew I would be talking about it with Lindsey in this conversation.
I learned a number of years ago from Dr. Allison Siebecker and Dr. Mark Pimentel about that relationship with food poisoning. If you have a history of food poisoning, it doesn’t mean that it definitely will have caused SIBO. But if you have a history of food poisoning, it might be a factor.
The IBS-Smart is a test that looks at those antibodies associated with this autoimmune process regarding the MMC and post infectious IBS. If you’re suspecting this might be a problem, you could do the IBS-Smart.
The FoodMarble. I did do some research. Dr. William Davis, the book is Super Gut. I havenot read the book but have listened to it. It was a pretty good book. He does recommend what’s called the Aire Device from FoodMarble. It sounds like it’s the same one that Lindsey was mentioning.
I’ve had at least one if not a couple of people read that book and get the device with mixed results. I think Lindsey admitted it’s not as good as the SIBO breath test, but it’s more cost effective, more convenient. Something to consider. Something I maybe need to bring up to some people, if we’re thinking about something severe, like post infectious IBS. Even other cases of SIBO, maybe.
Testing for SIFO. She mentioned she likes D arabinitol, which is a marker on Genova’s organics test or their NutrEval. I haven’t heard from anyone else yet that that is a good marker for SIFO specifically. I’ll need to do some research on that.
If I do a regular organic acid test from Mosaic Diagnostics, and I see yeast markers, including arabinose, I realize it’s not specific for SIBO. if someone is having excessive bloating and gas, and that shows up on the organic acids test, a lot of fungal markers. It’s not conclusive, but I don’t think D arabinitol is as well.
MSM as a treatment for SIBO. Recently, I had a patient who was trying MSM. I chatted with Lindsey about this. At that point, I didn’t hear, or maybe I did hear years back, but it’s not something that’s popular for SIBO. Maybe I heard of it and forgot. I didn’t think it was effective, and it wasn’t effective, but Lindsey said she didn’t follow the protocol correctly. I’m not sure. I’ll need to send this episode to that patient to listen to. Maybe she did follow the protocol.
There is no protocol that works for everybody with SIBO, whether it’s antimicrobials, herbal antimicrobials, rifaximin, or the Elemental Diet. They can be very effective, but everybody is different.
The berberine controversy. Maybe I need to do more research on it. I did a little bit of research. I did use a little bit of AI and asked ChatGPT to do some research. I looked at some of the published journals, not just basic research on blogs. ChatGPT’s conclusion was it’s pretty much beneficial. It wasn’t too concerned about the negative effects of berberine on the gut microbiome. The evidence is more in favor of it being beneficial to the gut microbiome.
There is a single study showing it could have some negative effects on lactobacillus and some other bacteria. Lindsey said it could increase harmful pathogens, but I don’t know if I’ve seen that. I’d like to see that.
I took a non-biased approach when it came to doing the searching and cheating using ChatGPT for this. Overall, the consensus was that it was beneficial. I put in ChatGPT that there is some evidence in the published research that berberine can have negative effects on the gut microbiome.
Prokinetics help with motility. If someone has post infectious IBS, there is an autoimmune process. You won’t completely get rid of SIBO, just because you won’t reverse the autoimmunity. You will probably have to take prokinetics to help with motility. She mentioned prucalopride, or Motegrity in the U.S. It’s a medication, not crazy about that. It does work.
Iberogast, which I do like. It’s an herbal formulation. There is also MotilPro, which is a combination of ginger, 5HTP. There’s LDN, low dose erythromycin. The top two are Motegrity and iberogast.
Finally, the prolonged fasting mimicking diet. She mentioned how she did this test and was negative for vinculin but still had other antibodies. She still had symptoms. She is going to try it again and see how that helps. Something to consider. I am familiar with the prolonged fasting mimicking diet. I personally never did that specific fast, but fasting mimicking.
Really great conversation. She spoke about other things as well. You could tell that Lindsey is very knowledgeable when it comes to post infectious IBS.
Again, as usual, I hope you found our conversation to be valuable. Thank you so much for listening. I look forward to catching you in the next episode.

